As of today, in Visual Studio 2012, the Run Code Analysis command is not available for F# projects.
Code Analysis can be used as a stand-alone tool with the FxCopCmd command-line application, and it can also be included in automated build processes such as MSBuild.
To enable Code Analysis in MSBuild, include the following elements in the project file:
<CodeAnalysisModuleSuppressionsFile>GlobalSuppressions.fs</CodeAnalysisModuleSuppressionsFile>
<RunCodeAnalysis>true</RunCodeAnalysis>
<CodeAnalysisRuleSet>My.ruleset</CodeAnalysisRuleSet>
Unfortunately, even with the above elements, Code Analysis will not run for F# projects during the MSBuild process.
Edit the Microsoft.CodeAnalysis.Targets file, which is located at:
C:\Program Files (x86)\MSBuild\Microsoft\VisualStudio\v11.0\CodeAnalysis
Append or '$(Language)'=='F#' at the following locations:
<DefineConstants Condition="'$(Language)'=='C#' ">CODE_ANALYSIS;$(DefineConstants)</DefineConstants>
<PropertyGroup Condition="'$(Language)'=='C#' or '$(Language)'=='VB'">
You may also download the modified Microsoft.CodeAnalysis.Targets file from here.